Biological Databases:

• Bibliographic:
  • SeqAnalRef, sequence analysis bibliography, Expasy.
  • BIOBOB, Biocomputing biliography.
• Software:
  • The BioCatalog
  • Yellow BAGI
  • Archives for Biological Software and Databases Around the World.
  • MolBiology Software, List of software for molecular biology.
• Multi-databases browsers:
  • ACNUC.
  • SRSWWW (Oslo, EBI)
  • NIH GenoBase.
• Protein sequences:
  • SWISS-PROT.
  • OWL.
  • PIR.
• Protein structures:
  • SCOP.
  • PDB (RCSB).
• Nucleotide sequences:
  • EMBL, EBI.
  • GenBank, NCBI.
  • DDBJ, Japan.
• Transcription factors:
  • TRANSFAC
• Patterns/families:
  • PROSITE
  • Pfam
  • PRODOM.
  • BLOCKS.
  • PRINTS.
  • Domo.
  • ProtFam (MIPS homepage).
  • SBASE, Segment BASE.
  • PROCLASS
• Structure based classifications:
  • Tree classification of PDB (by Alexandrov and Fischer using SARF2).
  • CATH Protein Structure Classification
  • SCOP Structural Classification of Proteins.
  • PDB chain clustering produced by Fischer et al.
• Misc.:
  • FlyBase
  • GeneCards
• Lists of databases:
  • LiMB (gopher).
  • BioDatabases List.
• Longer list

Local pages:

• Bioinformatics 2002.
• Homepage Department of Informatics, Bergen: Norwegian / English.
• Homepage bioinfomatics.
• Pratt, a program for finding conserved patterns in protein sequences.
• J-Express, a Java application for analysis and visualisation of microarray gene expression data, see also www.molmine.com.
• Microarray Informatics Resource Page, a collection of literature and web links.

Societies:

• BioInformatics forum in Bergen
• Society for Bioinformatics in the Nordic Countries
• International Society for Bioinformatics

Courtesy : ii.uib.no